HLA Assignment

References

J. Listgarten,N. Frahm, C. Kadie, C. Brander, D. Heckerman. A statistical framework for modeling HLA-dependent T cell response data, PLoS Computational Biology, 3(10): e188, October 2007.

N. Frahm, K. Yusim, T. Suscovich, S. Adams, J. Sidney, P. Hraber, H. Hewitt, Ca. Linde, D. Kavanagh, T. Woodberry, L. Henry, K. Faircloth, J. Listgarten,C. Kadie,N. Jojic,K. Sango, N. Brown, E. Pae, M. Zaman, F. Bihl, A. Khatri, M. John, S. Mallal, F. Marincola, B. Walker, A. Sette, D. Heckerman,B. Korber, C. Brander. Extensive HLA class I allele promiscuity among viral CTL epitopes. European Journal of Immunology, 37, August 2007.

Web Version, including general information

http://atom.research.microsoft.com/bio/hlaassign.aspx

Pre-Compiled Programs for Windows

http://www.codeplex.com/MSCompBio/Release/ProjectReleases.aspx

Source Code Files

(To download see Source Code tab above)

• Solution file: Qmr\HlaAssign.sln
• Build directory: Qmr\HlaAssign\HlaAssignCCS\bin\Release

Exe's:

• HlaAssign.exe
  • Regression test
• Tabulate.exe
  • Regression Test: PhyloTree\Tabulate\RegressionTest
• HlaAssignCcs.exe

How to run regression tests